Info • Cenococcum geophilum 1.58 v1.0
Please note that this organism is for archival use only. Please see the current Cenococcum geophilum 1.58 v2.0 site for the latest data and information.

Status

Assembly v1 (November 2012) is a draft assembly of Solexa gDNA reads. A total of 268 scaffolds and 177.6 Mbp were assembled using AllPathsLG.

Summary statistics for the Cenococcum geophilum 1.58 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 177.57
Sequencing read coverage depth 75.0x
# of contigs 2893
# of scaffolds 268
# of scaffolds >= 2Kbp 207
Scaffold N50 26
Scaffold L50 (Mbp) 2.24
# of gaps 2625
% of scaffold length in gaps 1.3%
Three largest Scaffolds (Mbp) 6.42, 6.11, 6.04


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_Rnnotator_RNA_contigs 49620 42010 84.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 2083 1114
transcript 994 642
exon 244 96
intron 356 55
description:
protein length (aa) 283 163
exons per gene 4.08 3
# of gene models 27529


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.