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Info • Cenococcum geophilum 1.58 v2.0

Status

Assembly v2 (January 2013) is an improved assembly. A total of 268 scaffolds and 177.6 Mbp were assembled from Solexa gDNAs using AllPathsLG, and then improved with PacBio gDNAs using PBJelly.

Summary statistics for the Cenococcum geophilum 1.58 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 177.56
Sequencing read coverage depth 75.0x
# of contigs 433
# of scaffolds 268
# of scaffolds >= 2Kbp 207
Scaffold N50 26
Scaffold L50 (Mbp) 2.24
# of gaps 165
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 6.41, 6.09, 6.04


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_Rnnotator_RNA_contigs 49620 42141 84.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1606 1350
transcript 1412 1178
exon 483 290
intron 102 60
description:
protein length (aa) 398 312
exons per gene 2.93 2
# of gene models 14748


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.