Info • Cephaloascus albidus ATCC 66658 v1.0


[Jan 2015] The Cephaloascus albidus ATCC 66658 genome was sequenced using the Illumina platform and assembled together with AllPathsLG version R49403, (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Cephaloascus albidus 66658 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 15.28
Sequencing read coverage depth 87.5x
# of contigs 177
# of scaffolds 25
# of scaffolds >= 2Kbp 17
Scaffold N50 4
Scaffold L50 (Mbp) 1.55
# of gaps 152
% of scaffold length in gaps 1.1%
Three largest Scaffolds (Mbp) 3.14, 2.26, 1.64

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator_assembled_Illumina_ESTs 12430 11374 91.5%

Gene Models FilteredModels1
length (bp) of: average median
gene 1599 1372
transcript 1549 1340
exon 1100 921
intron 123 67
protein length (aa) 454 377
exons per gene 1.41 1
# of gene models 6196


Joseph Spatafora, Oregon State University, USA

Jon Magnuson, Pacific Northwest National Laboratory, USA

David Culley, Pacific Northwest National Laboratory, USA


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.