Info • Cephaloascus fragrans 12-1022 v1.0


[Jan 2015] The Cephaloascus fragrans 12-1022 genome was sequenced using the Illumina platform and assembled together with AllPathsLG version R49403, (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Cephaloascus fragrans 12-1022 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 13.70
Sequencing read coverage depth 42.9x
# of contigs 36
# of scaffolds 16
# of scaffolds >= 2Kbp 14
Scaffold N50 4
Scaffold L50 (Mbp) 1.87
# of gaps 20
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 2.02, 1.96, 1.94

ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator_assembled_Illumina_ESTs 7717 6704 86.9%

Gene Models FilteredModels1
length (bp) of: average median
gene 1618 1404
transcript 1578 1362
exon 1140 957
intron 106 65
protein length (aa) 474 399
exons per gene 1.38 1
# of gene models 5717


Joseph Spatafora, Oregon State University, USA

Jon Magnuson, Pacific Northwest National Laboratory, USA

David Culley, Pacific Northwest National Laboratory, USA


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.