Info • Ceratobasidium sp. (anastomosis group I, AG-I) v1.0

Status

Assembly v1 (April 2015) is a minimal draft assembly, using Illumina gDNAs assembled successively with Velvet and AllPathsLG.

Summary statistics for the Ceratobasidium sp. (anastomosis group I, AG-I) v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 58.44
Sequencing read coverage depth 65.5x
# of contigs 3094
# of scaffolds 913
# of scaffolds >= 2Kbp 688
Scaffold N50 44
Scaffold L50 (Mbp) 0.32
# of gaps 2181
% of scaffold length in gaps 5.6%
Three largest Scaffolds (Mbp) 2.45, 1.82, 1.57


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 34188 30812 90.1%


Gene Models FilteredModels1
length (bp) of: average median
gene 1699 1443
transcript 1351 1126
exon 222 140
intron 70 58
description:
protein length (aa) 403 328
exons per gene 6.08 5
# of gene models 18060


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.