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Info • Cercophora caudata CBS 606.72 v1.0

Status

[September 2017] The Cercophora caudata CBS 606.72 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Cercophora caudata CBS 606.72 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 41.29
Sequencing read coverage depth 73.71x
# of contigs 11
# of scaffolds 11
# of scaffolds >= 2Kbp 11
Scaffold N50 3
Scaffold L50 (Mbp) 6.13
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 8.77, 6.43, 6.13


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 34703 34212 98.6%
Ests est.fasta 100801714 100719975 99.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1636 1382
transcript 1499 1254
exon 579 362
intron 88 61
description:
protein length (aa) 444 358
exons per gene 2.59 2
# of gene models 14552


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.