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Info • Cerinomyces ceraceus ATCC 56525 v1.0

Status

(May 2016) The Cerinomyces ceraceus ATCC56525 genome was sequenced using Illumina technology, assembled with AllPathsLG version R49403, and annotated with the JGI annotation pipeline.

Summary statistics for the Cerinomyces ceraceus v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.20
Sequencing read coverage depth 91.5x
# of contigs 836
# of scaffolds 376
# of scaffolds >= 2Kbp 285
Scaffold N50 27
Scaffold L50 (Mbp) 0.39
# of gaps 460
% of scaffold length in gaps 1.7%
Three largest Scaffolds (Mbp) 2.03, 1.12, 1.06


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 45662 43309 94.8%
Ests est.fasta 169403641 163276082 96.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1670 1420
transcript 1439 1215
exon 315 196
intron 67 55
description:
protein length (aa) 416 339
exons per gene 4.57 4
# of gene models 13489


Collaborators

Jon Magnuson, Pacific Northwest National Laboratory

Joseph W. Spatafora, Oregon State University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.