Info • Cercophora newfieldiana SMH2532-1 v1.0

Status

[August 2017] The Cercophora newfieldiana SMH2532-1 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Cercophora newfieldiana SMH2532-1 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.84
Sequencing read coverage depth 118.99x
# of contigs 7
# of scaffolds 7
# of scaffolds >= 2Kbp 7
Scaffold N50 3
Scaffold L50 (Mbp) 5.35
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 9.52, 6.15, 5.35


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 32508 32230 99.1%
Ests est.fasta 101184390 101056368 99.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1669 1426
transcript 1524 1284
exon 582 366
intron 92 63
description:
protein length (aa) 448 364
exons per gene 2.62 2
# of gene models 14520


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.