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Info • Cercophora scortea SMH4131-1 v1.0

Status

[December 2017] The Cercophora scortea SMH4131-1 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Cercophora scortea v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 40.17
Sequencing read coverage depth 103.21x
# of contigs 9
# of scaffolds 9
# of scaffolds >= 2Kbp 9
Scaffold N50 3
Scaffold L50 (Mbp) 5.95
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 9.50, 9.34, 5.95


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 35381 34093 96.4%
Ests est.fasta 116876517 116719087 99.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1928 1686
transcript 1743 1512
exon 621 384
intron 104 77
description:
protein length (aa) 489 403
exons per gene 2.81 2
# of gene models 11779


Collaborators

Pierre Gladieux, INRA, Montpellier

Francis M. Martin, INRA, France.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.