Info • Ceraceosorus guamensis MCA 4658 v1.0

Status

[April 2015] The Ceraceosorus guamensis MCA4658 genome was sequenced using the Illumina platform and assembled together with AllPathsLG version R49403, (Gnerre et al., 2010). Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Ceraceosorus guamensis MCA 4658 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 24.15
Sequencing read coverage depth 145x
# of contigs 316
# of scaffolds 251
# of scaffolds >= 2Kbp 241
Scaffold N50 28
Scaffold L50 (Mbp) 0.30
# of gaps 65
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.72, 0.70, 0.68


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator_assembled_Illumina_ESTs 19754 19526 98.8%


Gene Models FilteredModels1
length (bp) of: average median
gene 2147 1870
transcript 1860 1550
exon 480 281
intron 102 83
description:
protein length (aa) 522 415
exons per gene 3.88 3
# of gene models 7822


Collaborators

Dr. Catherine Aime, Purdue University, IN

Dr. Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Kijpornyongpan T, Mondo SJ, Barry K, Sandor L, Lee J, Lipzen A, Pangilinan J, LaButti K, Hainaut M, Henrissat B, Grigoriev IV, Spatafora JW, Aime MC
Broad Genomic Sampling Reveals a Smut Pathogenic Ancestry of the Fungal Clade Ustilaginomycotina.
Mol Biol Evol. 2018 Aug 1;35(8):1840-1854. doi: 10.1093/molbev/msy072

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.