Info • Cerrena unicolor v1.1


Cerrena unicolor was sequenced with the Illumina platform and assembled with AllPathsLG. The genome was annotated with the JGI annotation pipeline and custom analyses.  v1.0 of the annotation (Cerun1) was annotated without EST data. In v1.1 (Cerun2) the same genome assembly was used with the addition of ESTs

Summary statistics for the Cerrena unicolor v2.0 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 36.00
Sequencing read coverage depth 189.6
# of contigs 1462
# of scaffolds 547
# of scaffolds >= 2Kbp 371
Scaffold N50 22
Scaffold L50 (Mbp) 0.46
# of gaps 915
% of scaffold length in gaps 2.8%
Three largest Scaffolds (Mbp) 1.70, 1.37, 1.21

ESTs Data set # sequences total # mapped to genome % mapped to genome
Other RNAseq_contigs 34762 33482 96.3%

Gene Models FilteredModels1
length (bp) of: average median
gene 1759 1501
transcript 1408 1202
exon 237 147
intron 73 59
protein length (aa) 415 342
exons per gene 5.95 5
# of gene models 12966


Steven Singer, Joint Bioenergy Institute, Lawrence Berkeley National Lab


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.