Status
Cerrena unicolor was sequenced with the Illumina platform and assembled with AllPathsLG. The genome was annotated with the JGI annotation pipeline and custom analyses. v1.0 of the annotation (Cerun1) was annotated without EST data. In v1.1 (Cerun2) the same genome assembly was used with the addition of ESTs
Summary statistics for the Cerrena unicolor v2.0 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 36.00 |
| Sequencing read coverage depth | 189.6 |
| # of contigs | 1462 |
| # of scaffolds | 547 |
| # of scaffolds >= 2Kbp | 371 |
| Scaffold N50 | 22 |
| Scaffold L50 (Mbp) | 0.46 |
| # of gaps | 915 |
| % of scaffold length in gaps | 2.8% |
| Three largest Scaffolds (Mbp) | 1.70, 1.37, 1.21 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Other | RNAseq_contigs | 34762 | 33482 | 96.3% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1759 | 1501 |
| transcript | 1408 | 1202 |
| exon | 237 | 147 |
| intron | 73 | 59 |
| description: | ||
| protein length (aa) | 415 | 342 |
| exons per gene | 5.95 | 5 |
| # of gene models | 12966 |
Collaborators
Steven Singer, Joint Bioenergy Institute, Lawrence Berkeley National Lab
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
