Info • Cryptococcus gattii CA1873

Status

The genome sequence and gene models of Cryptococcus gattii CA1873 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Genome Assembly
Genome Assembly size (Mbp) 17.44
Sequencing read coverage depth 57.0x
# of contigs 72
# of scaffolds 33
# of scaffolds >= 2Kbp 30
Scaffold N50 8
Scaffold L50 (Mbp) 0.76
# of gaps 39
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 1.96, 1.48, 1.28


Gene Models ExternalModels
length (bp) of: average median
gene 1795 1515
transcript 1479 1230
exon 254 149
intron 68 57
description:
protein length (aa) 493 410
exons per gene 5.83 5
# of gene models 6634


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Farrer RA, Desjardins CA, Sakthikumar S, Gujja S, Saif S, Zeng Q, Chen Y, Voelz K, Heitman J, May RC, Fisher MC, Cuomo CA
Genome Evolution and Innovation across the Four Major Lineages of Cryptococcus gattii.
mBio. 2015 Sep 1;6(5):e00868-15. doi: 10.1128/mBio.00868-15

Funding

This project was not sequenced at the JGI.