Info • Cryptococcus gattii VGIV IND107

Status

The genome sequence and gene models of Cryptococcus gattii VGIV IND107 were not determined by the Joint Genome Institute (JGI), but were downloaded from Ensembl Fungi on April 11, 2020. Please note that this copy of the genome is not maintained by Ensembl and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's chromosomes and proteins.

Genome Assembly
Genome Assembly size (Mbp) 17.65
Sequencing read coverage depth 109.0x
# of contigs 98
# of scaffolds 34
# of scaffolds >= 2Kbp 32
Scaffold N50 8
Scaffold L50 (Mbp) 0.80
# of gaps 64
% of scaffold length in gaps 0.5%
Three largest Scaffolds (Mbp) 1.50, 1.27, 1.24


Gene Models ExternalModels
length (bp) of: average median
gene 1790 1520
transcript 1477 1233
exon 255 149
intron 67 57
description:
protein length (aa) 492 411
exons per gene 5.80 5
# of gene models 6696


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Farrer RA, Desjardins CA, Sakthikumar S, Gujja S, Saif S, Zeng Q, Chen Y, Voelz K, Heitman J, May RC, Fisher MC, Cuomo CA
Genome Evolution and Innovation across the Four Major Lineages of Cryptococcus gattii.
mBio. 2015 Sep 1;6(5):e00868-15. doi: 10.1128/mBio.00868-15

Funding

This project was not sequenced at the JGI.