Info • Chaetocladium brefeldii NRRL 2343 v1.0


[June 2019] The Chaetocladium brefeldii NRRL 2343 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section

Summary statistics for the Chaetocladium brefeldii NRRL 2343 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 48.45
Sequencing read coverage depth 180.0x
# of contigs 106
# of scaffolds 106
# of scaffolds >= 2Kbp 104
Scaffold N50 11
Scaffold L50 (Mbp) 1.31
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.90, 3.79, 2.44

Please note poor transcriptome mapping for this project. This meta-transcriptome was comprised of 9% rRNA and unmapped RNA reads megablast to C. jonesii and other members of the Mucorales order.
ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests est.fasta 96970493 60352375 62.2%
Other Trinity_assembled_Illumina_transcriptome 70675 1019 1.4%

Gene Models FilteredModels1
length (bp) of: average median
gene 1439 1167
transcript 1214 969
exon 300 172
intron 76 62
protein length (aa) 397 316
exons per gene 4.05 3
# of gene models 11585




The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.