Info • Chaetomidium fimeti CBS 168.71 v1.0

Status

[March 2018] The Chaetomidium fimeti CBS 168.71 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Chaetomidium fimeti v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 35.32
Sequencing read coverage depth 50.09x
# of contigs 24
# of scaffolds 24
# of scaffolds >= 2Kbp 24
Scaffold N50 4
Scaffold L50 (Mbp) 4.61
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.50, 4.94, 4.69


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 33971 33240 97.8%
Ests est.fasta 135442064 135310081 99.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1926 1643
transcript 1747 1483
exon 598 371
intron 95 67
description:
protein length (aa) 493 399
exons per gene 2.92 2
# of gene models 11448


Collaborators

Pierre Gladieux, INRA, France

Francis M. Martin, INRA, France.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.