Info • Chaetomium funicola MPI-SDFR-AT-0129 v1.0

Status

[February 2019] The Chaetomium funicola MPI-SDFR-AT-0129 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Chaetomium funicola MPI-SDFR-AT-0129 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.30
Sequencing read coverage depth 152.11x
# of contigs 22
# of scaffolds 22
# of scaffolds >= 2Kbp 21
Scaffold N50 4
Scaffold L50 (Mbp) 3.75
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 5.97, 4.31, 4.28


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 35415 32919 93.0%
Ests est.fasta 154547926 153618319 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1989 1711
transcript 1814 1542
exon 646 400
intron 99 74
description:
protein length (aa) 505 412
exons per gene 2.81 2
# of gene models 10414


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.