Info • Chaetomium funicola CBS 141.50 v1.0

Status

[February 2023] The Chaetomium funicola CBS 141.50 genome was sequenced using Illumina HiSeq 2500, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 32.62
Sequencing read coverage depth 28.4
# of contigs 228
# of scaffolds 198
# of scaffolds >= 2Kbp 184
Scaffold N50 30
Scaffold L50 (Mbp) 0.37
# of gaps 30
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.40, 1.21, 1.19


Gene Models FilteredModels1
length (bp) of: average median
gene 1853 1512
transcript 1620 1329
exon 523 281
intron 113 75
description:
protein length (aa) 540 443
exons per gene 3.10 3
# of gene models 9290


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Hensen N, Bonometti L, Westerberg I, Brännström IO, Guillou S, Cros-Aarteil S, Calhoun S, Haridas S, Kuo A, Mondo S, Pangilinan J, Riley R, LaButti K, Andreopoulos B, Lipzen A, Chen C, Yan M, Daum C, Ng V, Clum A, Steindorff A, Ohm RA, Martin F, Silar P, Natvig DO, Lalanne C, Gautier V, Ament-Velásquez SL, Kruys Å, Hutchinson MI, Powell AJ, Barry K, Miller AN, Grigoriev IV, Debuchy R, Gladieux P, Hiltunen Thorén M, Johannesson H
Genome-scale phylogeny and comparative genomics of the fungal order Sordariales.
Mol Phylogenet Evol. 2023 Oct 10;189():107938. doi: 10.1016/j.ympev.2023.107938

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.