Info • Chaetomium megalocarpum MPI-CAGE-AT-0009 v1.0

Status

[January 2019] The Chaetomium megalocarpum MPI-CAGE-AT-0009 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Chaetomium megalocarpum v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 33.77
Sequencing read coverage depth 279.76x
# of contigs 16
# of scaffolds 16
# of scaffolds >= 2Kbp 15
Scaffold N50 2
Scaffold L50 (Mbp) 5.32
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 12.16, 5.32, 4.50


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 36242 34381 94.9%
Ests est.fasta 140771001 139662218 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1938 1670
transcript 1754 1512
exon 585 364
intron 94 66
description:
protein length (aa) 493 401
exons per gene 3.00 3
# of gene models 11326


Collaborators

Francis M. Martin, INRA, France.

Joseph Spatafora, Oregon State University, USA

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.