Our systems will be offline for scheduled maintenance in our facility on Wed Aug 24 from 8am until 6pm PDT.
Info • Chalciporus piperatus 201810 CP v1.0

Status

[April 2020] The genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page

Summary statistics for the Chalciporus piperatus 201810 CP v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 46.26
Sequencing read coverage depth 132.42x
# of contigs 125
# of scaffolds 125
# of scaffolds >= 2Kbp 125
Scaffold N50 8
Scaffold L50 (Mbp) 1.83
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.87, 3.59, 3.54


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 69316 66525 96.0%
Ests est.fasta 195341195 194197021 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1838 1596
transcript 1506 1288
exon 251 159
intron 68 56
description:
protein length (aa) 448 364
exons per gene 6.00 5
# of gene models 13336


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.