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Info • Cochliobolus heterostrophus HAW225 v1.0

Status

[March 2021] The Cochliobolus heterostrophus HAW225 v1.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 43.98
Sequencing read coverage depth 419.58x
# of contigs 114
# of scaffolds 114
# of scaffolds >= 2Kbp 114
Scaffold N50 9
Scaffold L50 (Mbp) 1.92
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.51, 3.51, 2.91


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 607255 518168 85.3%
Ests est.fasta 47389466 46695872 98.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1761 1524
transcript 1602 1389
exon 560 341
intron 88 59
description:
protein length (aa) 477 402
exons per gene 2.86 2
# of gene models 12064


Collaborators

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.