Info • Cochliobolus heterostrophus Hm540

Status

The genome assembly and gene models of Cochliobolus heterostrophus Hm540 were not determined by the Joint Genome Institute (JGI), but provided by Bradford Condon and B. Gillian Turgeon on May 12, 2021 and have been published. 114 potential pseudogenes were removed from the original databaset because they showed internal stop codons. Please note that this copy of the genome is not maintained by the authors and is therefore not automatically updated. The JGI Annotation Pipeline was used to add additional functional annotation to the author's assembly and proteins.

Genome Assembly
Genome Assembly size (Mbp) 32.58
Sequencing read coverage depth Unknown
# of contigs 5131
# of scaffolds 4387
# of scaffolds >= 2Kbp 743
Scaffold N50 118
Scaffold L50 (Mbp) 0.08
# of gaps 744
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 0.44, 0.36, 0.29


Gene Models ExternalModels
length (bp) of: average median
gene 1742 1422
transcript 1552 1278
exon 536 299
intron 99 59
description:
protein length (aa) 517 426
exons per gene 2.90 2
# of gene models 10409


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Condon BJ, Leng Y, Wu D, Bushley KE, Ohm RA, Otillar R, Martin J, Schackwitz W, Grimwood J, MohdZainudin N, Xue C, Wang R, Manning VA, Dhillon B, Tu ZJ, Steffenson BJ, Salamov A, Sun H, Lowry S, LaButti K, Han J, Copeland A, Lindquist E, Barry K, Schmutz J, Baker SE, Ciuffetti LM, Grigoriev IV, Zhong S, Turgeon BG
Comparative genome structure, secondary metabolite, and effector coding capacity across Cochliobolus pathogens.
PLoS Genet. 2013;9(1):e1003233. doi: 10.1371/journal.pgen.1003233

Funding

This project was not sequenced at the JGI.