Status
[July 2021] The Cochliobolus heterostrophus PR1x412 v2.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.
Genome Assembly | |
Genome Assembly size (Mbp) | 41.32 |
Sequencing read coverage depth | 190.27x |
# of contigs | 67 |
# of scaffolds | 67 |
# of scaffolds >= 2Kbp | 67 |
Scaffold N50 | 7 |
Scaffold L50 (Mbp) | 2.24 |
# of gaps | 0 |
% of scaffold length in gaps | 0.0% |
Three largest Scaffolds (Mbp) | 4.52, 3.50, 3.45 |
ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
EstClusters | ESTclusters | 607255 | 524413 | 86.4% |
Ests | est.fasta | 47389466 | 47005013 | 99.2% |
Gene Models | FilteredModels1 | |
length (bp) of: | average | median |
gene | 1782 | 1531 |
transcript | 1610 | 1386 |
exon | 557 | 336 |
intron | 93 | 58 |
description: | ||
protein length (aa) | 482 | 404 |
exons per gene | 2.89 | 2 |
# of gene models | 11792 |
Collaborators
- Gillian Turgeon, Cornell University
- Scott Baker, DOE Joint Bioenergy Institute
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Haridas Sajeet, González Jennifer B., Riley Robert, Koriabine Maxim, Yan Mi, Ng Vivian, Rightmyer Adriana, Grigoriev Igor V., Baker Scott E., Turgeon B. Gillian
T-Toxin Virulence Genes: Unconnected Dots in a Sea of Repeats
mBio. 2023;: doi: 10.1128/mbio.00261-23
Haridas Sajeet, González Jennifer B., Riley Robert, Koriabine Maxim, Yan Mi, Ng Vivian, Rightmyer Adriana, Grigoriev Igor V., Baker Scott E., Turgeon B. Gillian
T-Toxin Virulence Genes: Unconnected Dots in a Sea of Repeats
mBio. 2023;: doi: 10.1128/mbio.00261-23
Links
- JGI EcoGroup Portals: Plant Pathogens
- JGI PhyloGroup Portals: Fungi Dikarya Ascomycota Pezizomycotina Dothideomycetes Pleosporales Pleosporaceae Bipolaris Maydis
Funding
The work conducted by the U.S. Department of Energy Joint Genome
Institute, a DOE Office of Science User Facility, is supported by
the Office of Science of the U.S. Department of Energy under
Contract No. DE-AC02-05CH11231.