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Info • Cochliobolus heterostrophus PR9b v2.0

Status

[July 2021] The Cochliobolus heterostrophus PR9b v2.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 37.59
Sequencing read coverage depth 189.96x
# of contigs 113
# of scaffolds 113
# of scaffolds >= 2Kbp 113
Scaffold N50 7
Scaffold L50 (Mbp) 2.02
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.56, 3.41, 3.39


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 607255 515718 84.9%
Ests est.fasta 47389466 46535017 98.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1778 1533
transcript 1619 1401
exon 568 344
intron 88 58
description:
protein length (aa) 484 406
exons per gene 2.85 2
# of gene models 11372


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.