Info • Cochliobolus heterostrophus PR9b v4.0

Status

[June 2022] The Cochliobolus heterostrophus PR9b v4.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 38.41
Sequencing read coverage depth 189.96x
# of contigs 114
# of scaffolds 113
# of scaffolds >= 2Kbp 113
Scaffold N50 7
Scaffold L50 (Mbp) 2.27
# of gaps 1
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 3.56, 3.41, 3.28


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 607255 516670 85.1%
Ests est.fasta 47389466 46581235 98.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1900 1545
transcript 1694 1407
exon 562 333
intron 104 59
description:
protein length (aa) 510 408
exons per gene 3.01 3
# of gene models 11145


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Haridas Sajeet, González Jennifer B., Riley Robert, Koriabine Maxim, Yan Mi, Ng Vivian, Rightmyer Adriana, Grigoriev Igor V., Baker Scott E., Turgeon B. Gillian
T-Toxin Virulence Genes: Unconnected Dots in a Sea of Repeats
mBio. 2023;: doi: 10.1128/mbio.00261-23

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.