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Info • Chionosphaera apobasidialis 52639 v1.0

Status

[Jan 2015] The Chionosphaera apobasidialis 52639 genome was sequenced using Illumina and assembled with AllPathsLG version R49403 (Gnerre et al. 2010) .

Summary statistics for the Chionosphaera apobasidialis 52639 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 21.83
Sequencing read coverage depth 94.3
# of contigs 1183
# of scaffolds 398
# of scaffolds >= 2Kbp 288
Scaffold N50 25
Scaffold L50 (Mbp) 0.29
# of gaps 785
% of scaffold length in gaps 5.8%
Three largest Scaffolds (Mbp) 1.19, 0.56, 0.54


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 41329 37721 91.3%


Gene Models FilteredModels1
length (bp) of: average median
gene 1540 1327
transcript 1308 1100
exon 251 152
intron 57 51
description:
protein length (aa) 372 300
exons per gene 5.21 4
# of gene models 9875


Collaborators

Joey Spatafora, Oregon State University

Jon Magnuson, Pacific Northwest National Lab

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.