Info • Chiua virens LA06

Status

[February 2023] The genome sequence and gene models of Chiua virens were not determined by the Joint Genome Institute (JGI). The assembly and the annotation were performed by GrandOmics Biosciences (Wuhan, China). In order to allow comparative analyses with other genomes sequenced by the JGI, a copy of this genome is incorporated into the JGI Genome Portal. JGI tools were used to automatically annotate functions and families of the predicted proteins. Please note that the release presented here includes the gene annotation v1.0, and all gene models are included in the ExternalModels track. 

Summary statistics for the Chiua virens LA06 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 48.50
Sequencing read coverage depth
# of contigs 149
# of scaffolds 149
# of scaffolds >= 2Kbp 148
Scaffold N50 10
Scaffold L50 (Mbp) 1.94
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.58, 2.88, 2.71


Gene Models FilteredModels1
length (bp) of: average median
gene 1620 1323
transcript 1314 1059
exon 223 141
intron 65 56
description:
protein length (aa) 438 353
exons per gene 5.90 5
# of gene models 11148


Collaborators



Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Wu G, Miyauchi S, Morin E, Kuo A, Drula E, Varga T, Kohler A, Feng B, Cao Y, Lipzen A, Daum C, Hundley H, Pangilinan J, Johnson J, Barry K, LaButti K, Ng V, Ahrendt S, Min B, Choi IG, Park H, Plett JM, Magnuson J, Spatafora JW, Nagy LG, Henrissat B, Grigoriev IV, Yang ZL, Xu J, Martin FM
Evolutionary innovations through gain and loss of genes in the ectomycorrhizal Boletales.
New Phytol. 2022 Feb;233(3):1383-1400. doi: 10.1111/nph.17858

Funding

This project was not sequenced at the JGI.