Info • Chlamydomonas incerta SAG 7.73

Status

The Chlamydomonas incerta SAG 7.73 genome sequence and gene models were not determined by the JGI, but were provided by Rory Craig in July 2020. Please note that this copy of the genome is not maintained by Rory Craig and is therefore not automatically updated. In order to allow comparative analyses with other algal genomes sequenced by the JGI, a copy of this genome is incorporated into PhycoCosm. The JGI Annotation Pipeline was used to add functional annotation to this genome.

The genome was sequenced with Illumina and PacBio, assembled by Canu, and polished by arrow and pilon. Gene prediction was performed with braker2.

Summary statistics for the Chlamydomonas incerta SAG 7.73 release are below.
Genome Assembly
Genome Assembly size (Mbp) 129.24
Sequencing read coverage depth 48.84x PacBio, 85.93x Illumina
# of contigs 453
# of scaffolds 453
# of scaffolds >= 2Kbp 447
Scaffold N50 24
Scaffold L50 (Mbp) 1.58
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 6.38, 4.89, 4.43


Gene Models ExternalModels
length (bp) of: average median
gene 5791 4640
transcript 3306 2550
exon 325 149
intron 273 224
description:
protein length (aa) 805 548
exons per gene 10.18 8
# of gene models 16957


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Craig RJ, Hasan AR, Ness RW, Keightley PD
Comparative genomics of Chlamydomonas.
Plant Cell. 2021 May 31;33(4):1016-1041. doi: 10.1093/plcell/koab026

Funding

This project was not sequenced at the JGI.