Info • Absidia padenii NRRL 2977 v1.0

Status

[August 2016] The Chlamydoabsidia padenii NRRL 2977 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Absidia padenii NRRL 2977 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.33
Sequencing read coverage depth 139.05x
# of contigs 117
# of scaffolds 117
# of scaffolds >= 2Kbp 111
Scaffold N50 13
Scaffold L50 (Mbp) 0.91
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.48, 2.14, 1.51


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 45823 43104 94.1%
Ests est.fasta 147384695 145828643 98.9%


Gene Models FilteredModels1
length (bp) of: average median
gene 1696 1404
transcript 1386 1137
exon 288 173
intron 83 73
description:
protein length (aa) 411 327
exons per gene 4.81 4
# of gene models 13495


Collaborators

Joey Spatafora, Oregon State, Oregon

Jason Stajich, UC Riverside, California

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Chang Y, Wang Y, Mondo S, Ahrendt S, Andreopoulos W, Barry K, Beard J, Benny GL, Blankenship S, Bonito G, Cuomo C, Desiro A, Gervers KA, Hundley H, Kuo A, LaButti K, Lang BF, Lipzen A, O'Donnell K, Pangilinan J, Reynolds N, Sandor L, Smith ME, Tsang A, Grigoriev IV, Stajich JE, Spatafora JW
Evolution of zygomycete secretomes and the origins of terrestrial fungal ecologies.
iScience. 2022 Aug 19;25(8):104840. doi: 10.1016/j.isci.2022.104840

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.