Info • Chondrostereum purpureum OMC1767 v1.0

Status

[January 2023] The Chondrostereum purpureum OMC1767 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. The mitochondrial genome was assembled separately and is available in the Download section.

The genome is likely a polymorphic dikaryon, and this is reflected in an assembly and annotation with significant separation of alleles. Many of the scaffolds are very similar to larger scaffolds and are predicted to constitute an alternate or secondary haplotype. To represent these primary and secondary haplotypes in the Portal, we have created 'primary alleles' and 'secondary alleles' gene model tracks, comprising the models found on each haplotype. The goal of the GeneCatalog (GC) is to produce a non-redundant set of models which captures the full functional repertoire of the genome, and so the few secondary alleles that are unique were included in the GC, while all others were not.

Genome Assembly
Genome Assembly size (Mbp) 80.98
Sequencing read coverage depth 77.34x
# of contigs 507
# of scaffolds 507
# of scaffolds >= 2Kbp 506
Scaffold N50 64
Scaffold L50 (Mbp) 0.33
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.04, 1.63, 1.12


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 54450 53164 97.6%
Ests est.fasta 87579112 87183646 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1918 1659
transcript 1559 1364
exon 245 149
intron 69 57
description:
protein length (aa) 454 376
exons per gene 6.37 5
# of gene models 17995


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.