Info • Chytriomyces sp. MP 71 v1.0

Status

[October 2016] The Chytriomyces nov. sp. MP71 genome was sequenced with Illumina, assembled with AllPathsLG, and annotated with the JGI Annotation pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Chytriomyces sp. MP71 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.38
Sequencing read coverage depth 96.4x
# of contigs 2389
# of scaffolds 2073
# of scaffolds >= 2Kbp 1557
Scaffold N50 234
Scaffold L50 (Mbp) 0.05
# of gaps 316
% of scaffold length in gaps 1.0%
Three largest Scaffolds (Mbp) 0.27, 0.24, 0.22


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 83691 70588 84.3%
Ests est.fasta 140812580 131491264 93.4%


Gene Models FilteredModels2
length (bp) of: average median
gene 1570 1309
transcript 1351 1116
exon 345 217
intron 77 61
description:
protein length (aa) 391 310
exons per gene 3.92 3
# of gene models 16054


Collaborators

Tim James, University of Michigan, USA

Joseph Spatafora, Oregon State University, USA



Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Amses KR, Simmons DR, Longcore JE, Mondo SJ, Seto K, Jerônimo GH, Bonds AE, Quandt CA, Davis WJ, Chang Y, Federici BA, Kuo A, LaButti K, Pangilinan J, Andreopoulos W, Tritt A, Riley R, Hundley H, Johnson J, Lipzen A, Barry K, Lang BF, Cuomo CA, Buchler NE, Grigoriev IV, Spatafora JW, Stajich JE, James TY
Diploid-dominant life cycles characterize the early evolution of Fungi.
Proc Natl Acad Sci U S A. 2022 Sep 6;119(36):e2116841119. doi: 10.1073/pnas.2116841119

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.