Info • Citeromyces matritensis NRRL Y-2407

Status

The genome of Citeromyces matritensis NRRL Y-2407 was sequenced using Illumina HiSeq 2500 and assembled using DISCOVAR v. 51885, SPAdes v. 3.5.1, and MASURCA v. 3. Please note that this copy of the genome is not maintained by Antonis Rokas or the publication authors and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Citeromyces matritensis NRRL Y-2407 release are below.
Genome Assembly
Genome Assembly size (Mbp) 20.32
Sequencing read coverage depth 36x
# of contigs 3459
# of scaffolds 3451
# of scaffolds >= 2Kbp 1412
Scaffold N50 192
Scaffold L50 (Mbp) 0.03
# of gaps 8
% of scaffold length in gaps 0.1%
Three largest Scaffolds (Mbp) 0.14, 0.14, 0.13


Gene Models ExternalModels
length (bp) of: average median
gene 1236 958
transcript 1151 919
exon 893 668
intron 295 45
description:
protein length (aa) 383 306
exons per gene 1.29 1
# of gene models 7868


Collaborators

Kenneth H Wolfe, University College Dublin, Ireland.

Antonis Rokas, Vanderbilt University, U.S.A.

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Krassowski T, Coughlan AY, Shen XX, Zhou X, Kominek J, Opulente DA, Riley R, Grigoriev IV, Maheshwari N, Shields DC, Kurtzman CP, Hittinger CT, Rokas A, Wolfe KH
Evolutionary instability of CUG-Leu in the genetic code of budding yeasts.
Nat Commun. 2018 May 14;9(1):1887. doi: 10.1038/s41467-018-04374-7

Funding

This project was not sequenced at the JGI.