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Info • Phaeomoniellales sp. NC0930 v1.0

Status

[January 2019] The genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. The transcriptome was sampled from a different isolate NC0884 (indistinguishable from this isolate by ITS), sequenced with Illumina, and assembled with Trinity. The mitochondrial genome was assembled separately and is available on the Download page.

Summary statistics for the Phaeomoniellales sp. NC0930 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.28
Sequencing read coverage depth 118.45x
# of contigs 22
# of scaffolds 22
# of scaffolds >= 2Kbp 22
Scaffold N50 7
Scaffold L50 (Mbp) 2.23
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 4.76, 3.05, 2.63


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 32040 31281 97.6%
Ests est.fasta 98543059 98043748 99.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1919 1726
transcript 1786 1597
exon 637 382
intron 76 59
description:
protein length (aa) 500 440
exons per gene 2.81 2
# of gene models 13036


Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.