Info • Sistotrema sp. PMI_390 v1.0

Status

Assembly v1 (May 2014) is a minimal draft assembly of Illumina gDNA reads. A total of 683 scaffolds and 41.6 Mbp were assembled using first Velvet and then AllPathsLG.

Summary statistics for the Sistotrema sp. PMI_390 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 41.64
Sequencing read coverage depth 131.2x
# of contigs 1435
# of scaffolds 683
# of scaffolds >= 2Kbp 542
Scaffold N50 42
Scaffold L50 (Mbp) 0.27
# of gaps 752
% of scaffold length in gaps 2.0%
Three largest Scaffolds (Mbp) 1.21, 1.15, 0.81


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 108533 91961 84.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1781 1544
transcript 1405 1212
exon 259 149
intron 87 66
description:
protein length (aa) 396 323
exons per gene 5.42 4
# of gene models 15452


Genome Reference(s)

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.