Info • Clavariopsis aquatica WDA-00-1

Status

The genome sequence and gene prediction of Clavariopsis aquatica WDA-00-1 have not been determined by the Joint Genome Institute (JGI), but were provided by Felix Heeger. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds, and 5) unsupported short models. All models are available in the ExternalModels track. Please note that this copy of the genome is not maintained by Felix Heeger and is therefore not automatically updated. JGI tools were used to automatically annotate predicted proteins.

Summary statistics for the Clavariopsis aquatica WDA-00-1 release are below.
Genome Assembly
Genome Assembly size (Mbp) 34.19
Sequencing read coverage depth Unknown
# of contigs 2659
# of scaffolds 2650
# of scaffolds >= 2Kbp 1962
Scaffold N50 342
Scaffold L50 (Mbp) 0.03
# of gaps 9
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 0.17, 0.14, 0.13


Gene Models FilteredModels1
length (bp) of: average median
gene 1971 1693
transcript 1486 1233
exon 495 271
intron 85 58
description:
protein length (aa) 495 411
exons per gene 3.00 3
# of gene models 11608


Collaborators

  • Felix Heeger, Leibniz-Institute of Freshwater Ecology and Inland Fisheries, Bundesanstalt für Materialforschung und -prüfung, Germany

Genome Reference(s)

Links

Funding

This project was not sequenced at the JGI.