Info • Clathrospora elynae CBS 161.51 v1.0

Status

[Oct 2014] The Clathrospora elynae genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R49403 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

 

Summary statistics for the Clathrospora elynae CBS 161.51 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.39
Sequencing read coverage depth 80.8x
# of contigs 1994
# of scaffolds 617
# of scaffolds >= 2Kbp 511
Scaffold N50 57
Scaffold L50 (Mbp) 0.18
# of gaps 1377
% of scaffold length in gaps 6.2%
Three largest Scaffolds (Mbp) 1.31, 0.62, 0.55


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 25546 23895 93.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1600 1356
transcript 1468 1229
exon 574 363
intron 87 56
description:
protein length (aa) 414 330
exons per gene 2.56 2
# of gene models 13617


Collaborators

Joseph Spatafora, Oregon State University, USA
Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.