Status
The genome of Cladosporium fulvum was not sequenced by the JGI but by Wageningen University in The Netherlands. Genes were predicted using Genemark. For more information, please contact Pierre de Wit. The predicted genes were annotated using the JGI fungal genome annotation pipeline.
Summary statistics for the Cladosporium fulvum v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 61.11 |
| Sequencing read coverage depth | unknown |
| # of contigs | 5382 |
| # of scaffolds | 4865 |
| # of scaffolds >= 2Kbp | 2664 |
| Scaffold N50 | 250 |
| Scaffold L50 (Mbp) | 0.06 |
| # of gaps | 517 |
| % of scaffold length in gaps | 0.5% |
| Three largest Scaffolds (Mbp) | 0.53, 0.53, 0.33 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1416 | 1149 |
| transcript | 1295 | 1053 |
| exon | 595 | 336 |
| intron | 104 | 58 |
| description: | ||
| protein length (aa) | 432 | 351 |
| exons per gene | 2.18 | 2 |
| # of gene models | 14127 |
Collaborators
Pierre de Wit,
Wageningen University
Igor Grigoriev, DOE Joint Genome Institute
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
de Wit PJ, van der Burgt A, Ökmen B, Stergiopoulos I, Abd-Elsalam KA, Aerts AL, Bahkali AH, Beenen HG, Chettri P, Cox MP, Datema E, de Vries RP, Dhillon B, Ganley AR, Griffiths SA, Guo Y, Hamelin RC, Henrissat B, Kabir MS, Jashni MK, Kema G, Klaubauf S, Lapidus A, Levasseur A, Lindquist E, Mehrabi R, Ohm RA, Owen TJ, Salamov A, Schwelm A, Schijlen E, Sun H, van den Burg HA, van Ham RC, Zhang S, Goodwin SB, Grigoriev IV, Collemare J, Bradshaw RE
The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry.
PLoS Genet. 2012;8(11):e1003088. doi: 10.1371/journal.pgen.1003088
Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, Barry KW, Condon BJ, Copeland AC, Dhillon B, Glaser F, Hesse CN, Kosti I, LaButti K, Lindquist EA, Lucas S, Salamov AA, Bradshaw RE, Ciuffetti L, Hamelin RC, Kema GH, Lawrence C, Scott JA, Spatafora JW, Turgeon BG, de Wit PJ, Zhong S, Goodwin SB, Grigoriev IV
Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi.
PLoS Pathog. 2012;8(12):e1003037. doi: 10.1371/journal.ppat.1003037
de Wit PJ, van der Burgt A, Ökmen B, Stergiopoulos I, Abd-Elsalam KA, Aerts AL, Bahkali AH, Beenen HG, Chettri P, Cox MP, Datema E, de Vries RP, Dhillon B, Ganley AR, Griffiths SA, Guo Y, Hamelin RC, Henrissat B, Kabir MS, Jashni MK, Kema G, Klaubauf S, Lapidus A, Levasseur A, Lindquist E, Mehrabi R, Ohm RA, Owen TJ, Salamov A, Schwelm A, Schijlen E, Sun H, van den Burg HA, van Ham RC, Zhang S, Goodwin SB, Grigoriev IV, Collemare J, Bradshaw RE
The genomes of the fungal plant pathogens Cladosporium fulvum and Dothistroma septosporum reveal adaptation to different hosts and lifestyles but also signatures of common ancestry.
PLoS Genet. 2012;8(11):e1003088. doi: 10.1371/journal.pgen.1003088
Ohm RA, Feau N, Henrissat B, Schoch CL, Horwitz BA, Barry KW, Condon BJ, Copeland AC, Dhillon B, Glaser F, Hesse CN, Kosti I, LaButti K, Lindquist EA, Lucas S, Salamov AA, Bradshaw RE, Ciuffetti L, Hamelin RC, Kema GH, Lawrence C, Scott JA, Spatafora JW, Turgeon BG, de Wit PJ, Zhong S, Goodwin SB, Grigoriev IV
Diverse lifestyles and strategies of plant pathogenesis encoded in the genomes of eighteen Dothideomycetes fungi.
PLoS Pathog. 2012;8(12):e1003037. doi: 10.1371/journal.ppat.1003037
Funding
This project was not sequenced at the JGI.
