Info • Clavispora lusitaniae MJ12 v1.0

Status

[November 2020] The Clavispora lusitaniae MJ12 v1.0 genome was sequenced with PacBio, assembled with Flye, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Clavispora lusitaniae MJ12 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 12.14
Sequencing read coverage depth 71.23x
# of contigs 8
# of scaffolds 8
# of scaffolds >= 2Kbp 8
Scaffold N50 3
Scaffold L50 (Mbp) 1.88
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 2.43, 2.21, 1.88


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 6199 5585 90.1%
Ests est.fasta 122516384 122161200 99.7%


Gene Models FilteredModels2
length (bp) of: average median
gene 1979 1647
transcript 1958 1624
exon 1719 1444
intron 148 66
description:
protein length (aa) 487 407
exons per gene 1.14 1
# of gene models 5316


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.