Info • Cladophialophora psammophila CBS 110553

Status

Cladophialophora psammophila was sequenced by the Broad Institute as part of the black yeast comparative genomics project. The genome and gene models of Cladophialophora psammophila were downloaded from NCBI on June 1, 2016. JGI tools were used to add functional annotations to the gene models. Please note that this copy of the genome is not maintained by NCBI or the Broad Institute and is therefore not automatically updated. In order to allow comparative analyses with other fungal genomes sequenced by the JGI, a copy of this genome is incorporated into Mycocosm.

 

Summary statistics for the Cladophialophora psammophila CBS 110553 release are below.
Genome Assembly
Genome Assembly size (Mbp) 39.42
Sequencing read coverage depth
# of contigs 246
# of scaffolds 123
# of scaffolds >= 2Kbp 107
Scaffold N50 10
Scaffold L50 (Mbp) 1.35
# of gaps 123
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 3.80, 2.36, 2.11


Gene Models ExternalModels
length (bp) of: average median
gene 1508 1332
transcript 1409 1233
exon 599 332
intron 75 61
description:
protein length (aa) 469 411
exons per gene 2.35 2
# of gene models 13421


Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Teixeira MM, Moreno LF, Stielow BJ, Muszewska A, Hainaut M, Gonzaga L, Abouelleil A, Patané JS, Priest M, Souza R, Young S, Ferreira KS, Zeng Q, da Cunha MM, Gladki A, Barker B, Vicente VA, de Souza EM, Almeida S, Henrissat B, Vasconcelos AT, Deng S, Voglmayr H, Moussa TA, Gorbushina A, Felipe MS, Cuomo CA, de Hoog GS
Exploring the genomic diversity of black yeasts and relatives (Chaetothyriales, Ascomycota).
Stud Mycol. 2017 Mar;86():1-28. doi: 10.1016/j.simyco.2017.01.001

Funding

This project was not sequenced at the JGI.