Info • Clavicorona pyxidata HHB10654 v1.0

Status

June 2014. The Clavicorona pyxidatus genome was sequenced using Illumina technology and assembled together with AllPathsLG version R47710, (Gnerre et al. 2010).

Summary statistics for the Clavicorona pyxidata HHB10654 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 37.99
Sequencing read coverage depth 90.3
# of contigs 1188
# of scaffolds 477
# of scaffolds >= 2Kbp 351
Scaffold N50 26
Scaffold L50 (Mbp) 0.47
# of gaps 711
% of scaffold length in gaps 2.8%
Three largest Scaffolds (Mbp) 1.96, 1.22, 1.02


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 56754 49657 87.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1692 1425
transcript 1390 1165
exon 245 151
intron 67 57
description:
protein length (aa) 401 325
exons per gene 5.67 4
# of gene models 15130


Collaborators

Joseph W. Spatafora, Oregon State University

Laszlo Nagy, Clark University

Otto Miettinen, Clark University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.