Info • Artomyces pyxidatus HHB10654 v1.0

Status

[June 2014] The Artomyces pyxidatus genome was sequenced using Illumina technology and assembled together with AllPathsLG version R47710, (Gnerre et al. 2010).

Genome Assembly
Genome Assembly size (Mbp) 37.99
Sequencing read coverage depth 90.3
# of contigs 1188
# of scaffolds 477
# of scaffolds >= 2Kbp 351
Scaffold N50 26
Scaffold L50 (Mbp) 0.47
# of gaps 711
% of scaffold length in gaps 2.8%
Three largest Scaffolds (Mbp) 1.96, 1.22, 1.02


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 56754 49657 87.5%


Gene Models FilteredModels1
length (bp) of: average median
gene 1692 1425
transcript 1390 1165
exon 245 151
intron 67 57
description:
protein length (aa) 401 325
exons per gene 5.67 4
# of gene models 15130


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Looney B, Miyauchi S, Morin E, Drula E, Courty PE, Kohler A, Kuo A, LaButti K, Pangilinan J, Lipzen A, Riley R, Andreopoulos W, He G, Johnson J, Nolan M, Tritt A, Barry KW, Grigoriev IV, Nagy LG, Hibbett D, Henrissat B, Matheny PB, Labbé J, Martin FM
Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse lineage of mushroom-forming fungi.
New Phytol. 2022 Mar;233(5):2294-2309. doi: 10.1111/nph.17892

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.