Info • Cladorrhinum sp. PSN332 v1.0

Status

[March 2022] The Cladorrhinum sp. PSN332 v1.0 genome was sequenced with Illumina, assembled with SPAdes, and annotated with the JGI Annotation Pipeline. The transcriptome was sequenced with Illumina and assembled with Trinity. The mitochondrial genome was assembled separately and is available in the Download tab.

Genome Assembly 163.15x
Genome Assembly size (Mbp) 37.95
Sequencing read coverage depth 163.15x
# of contigs 272
# of scaffolds 250
# of scaffolds >= 2Kbp 235
Scaffold N50 34
Scaffold L50 (Mbp) 0.37
# of gaps 22
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 1.03, 0.88, 0.87


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 33894 32915 97.1%
Ests est.fasta 57780694 57344730 99.2%


Gene Models FilteredModels1
length (bp) of: average median
gene 1913 1626
transcript 1753 1485
exon 693 435
intron 107 68
description:
protein length (aa) 502 410
exons per gene 2.53 2
# of gene models 12024


Collaborators

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.