Status
The genome sequence and gene models
of Cladosporium sphaerospermum UM 843 were not determined
by the Joint Genome Institute (JGI), but were provided by the Stajich lab in June, 2016.
In order to allow comparative analyses with other fungal genomes
sequenced by the JGI, a copy of this genome is incorporated into
Mycocosm. JGI tools were used to automatically annotate predicted
proteins. Please note that this copy of the genome is not
maintained by the Stajich lab and is therefore not automatically
updated.
Summary statistics for the Cladosporium sphaerospermum UM
843 release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp) | 26.69 |
| Sequencing read coverage depth | NA |
| # of contigs | 117 |
| # of scaffolds | 117 |
| # of scaffolds >= 2Kbp | 103 |
| Scaffold N50 | 11 |
| Scaffold L50 (Mbp) | 0.97 |
| # of gaps | 0 |
| % of scaffold length in gaps | 0.0% |
| Three largest Scaffolds (Mbp) | 1.69, 1.46, 1.36 |
| Gene Models | ExternalModels | |
| length (bp) of: | average | median |
| gene | 1649 | 1385 |
| transcript | 1508 | 1281 |
| exon | 653 | 351 |
| intron | 109 | 61 |
| description: | ||
| protein length (aa) | 503 | 427 |
| exons per gene | 2.31 | 2 |
| # of gene models | 8807 |
Genome Reference(s)
Please cite the following publication(s) if you use the data from this genome in your research:
Ng KP, Yew SM, Chan CL, Soo-Hoo TS, Na SL, Hassan H, Ngeow YF, Hoh CC, Lee KW, Yee WY
Sequencing of Cladosporium sphaerospermum, a Dematiaceous fungus isolated from blood culture.
Eukaryot Cell. 2012 May;11(5):705-6. doi: 10.1128/EC.00081-12
Ng KP, Yew SM, Chan CL, Soo-Hoo TS, Na SL, Hassan H, Ngeow YF, Hoh CC, Lee KW, Yee WY
Sequencing of Cladosporium sphaerospermum, a Dematiaceous fungus isolated from blood culture.
Eukaryot Cell. 2012 May;11(5):705-6. doi: 10.1128/EC.00081-12
Funding
This project was not sequenced at the JGI.
