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Info • Clonostachys rosea CBS125111 v1.0

Status

[Mar 2015] The Clonostachys rosea CBS125111 genome was sequenced using Illumina and assembled using AllPathsLG. (Gnerre et al. 2010)

Summary statistics for the Clonostachys rosea CBS125111 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 52.44
Sequencing read coverage depth 59
# of contigs 774
# of scaffolds 74
# of scaffolds >= 2Kbp 69
Scaffold N50 8
Scaffold L50 (Mbp) 2.07
# of gaps 700
% of scaffold length in gaps 1.7%
Three largest Scaffolds (Mbp) 4.39, 4.03, 3.86


ESTs Data set # sequences total # mapped to genome % mapped to genome
Other JGI_RNA_contigs 32917 32445 98.6%


Gene Models FilteredModels1
length (bp) of: average median
gene 1752 1530
transcript 1599 1398
exon 565 354
intron 86 65
description:
protein length (aa) 465 393
exons per gene 2.83 2
# of gene models 18639


Collaborators

Kathryn Bushley, University of Minnesota

Derek Johnson, Oregon State University

Joey Spatafora, Oregon State University

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.