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Info • Clonostachys rosea IK726

Status

The genome sequence and gene models of Clonostachys rosea IK726 were not determined by the Joint Genome Institute (JGI), but were provided by the authors. In order to ensure this genome is comparable to those sequenced by the JGI, we applied filters to remove if present: 1) transposable elements, 2) pseudogenes, 3) alternative transcripts and overlapping models, 4) alleles on secondary scaffolds, and 5) unsupported short models. This resulted in the removal of 1305 models from C. rosea and the generation of the FilteredModels1 gene track. All published models are available in the ExternalModels track. JGI tools were used to automatically annotate predicted proteins. Please note that this copy of the genome is not maintained by NCBI and is therefore not automatically updated.

Genome Assembly
Genome Assembly size (Mbp) 70.05
Sequencing read coverage depth 150x
# of contigs 1527
# of scaffolds 727
# of scaffolds >= 2Kbp 721
Scaffold N50 11
Scaffold L50 (Mbp) 1.90
# of gaps 800
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 5.14, 4.86, 3.93


Gene Models FilteredModels1
length (bp) of: average median
gene 1680 1461
transcript 1529 1317
exon 528 331
intron 82 64
description:
protein length (aa) 462 390
exons per gene 2.90 2
# of gene models 19941


Collaborators



Genome Reference(s)

Funding

This project was not sequenced at the JGI.