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Info • Coccodinium bartschii CBS 121709 v1.0

Status

[October 2016] The Coccodinium bartschii genome was sequenced using the Illumina platform and assembled with AllPathsLG release version R47710 (Gnerre et al., 2010).
Mitochondrial genome was assembled separately and is available in the downloads section.

Summary statistics for the Coccodinium bartschii CBS 121709 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 28.27
Sequencing read coverage depth 66.8x
# of contigs 338
# of scaffolds 79
# of scaffolds >= 2Kbp 59
Scaffold N50 7
Scaffold L50 (Mbp) 1.75
# of gaps 259
% of scaffold length in gaps 1.2%
Three largest Scaffolds (Mbp) 2.81, 2.72, 2.19


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests RNNotator assembled Illumina ESTs 22158 21881 98.7%


Gene Models FilteredModels1
length (bp) of: average median
gene 1764 1540
transcript 1628 1401
exon 744 428
intron 116 67
description:
protein length (aa) 461 379
exons per gene 2.19 2
# of gene models 9532


Collaborators

Joseph Spatafora, Oregon State University, USA

Pedro Crous and Manfred Binder at CBS-KNAW, The Netherlands.

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.