Info • Cochliobolus heterostrophus C4 v3.0

Status

[May 2021] The Cochliobolus heterostrophus C4 v3.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 37.67
Sequencing read coverage depth 185.7x
# of contigs 81
# of scaffolds 81
# of scaffolds >= 2Kbp 74
Scaffold N50 7
Scaffold L50 (Mbp) 1.93
# of gaps 0
% of scaffold length in gaps 0.0%
Three largest Scaffolds (Mbp) 3.61, 3.47, 3.23


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 607255 527263 86.8%
Ests est.fasta 47389466 47114694 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1688 1445
transcript 1529 1308
exon 546 321
intron 90 59
description:
protein length (aa) 472 394
exons per gene 2.80 2
# of gene models 11970


Collaborators

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.