Info • Cochliobolus heterostrophus C4 v6.0

Status

[June 2022] The Cochliobolus heterostrophus C4 v6.0 genome was sequenced with PacBio, assembled with Falcon, and annotated with the JGI Annotation Pipeline. Mitochondrial genome was assembled separately and is available in the downloads section.

Genome Assembly
Genome Assembly size (Mbp) 37.79
Sequencing read coverage depth 185.7x
# of contigs 82
# of scaffolds 70
# of scaffolds >= 2Kbp 64
Scaffold N50 7
Scaffold L50 (Mbp) 2.06
# of gaps 12
% of scaffold length in gaps 0.3%
Three largest Scaffolds (Mbp) 3.76, 3.61, 3.23


ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters ESTclusters 607255 527251 86.8%
Ests est.fasta 47389466 47114691 99.4%


Gene Models FilteredModels1
length (bp) of: average median
gene 1886 1534
transcript 1684 1395
exon 564 338
intron 104 59
description:
protein length (aa) 506 407
exons per gene 2.99 2
# of gene models 11324


Collaborators

Genome Reference(s)

Please cite the following publication(s) if you use the data from this genome in your research:

Haridas Sajeet, González Jennifer B., Riley Robert, Koriabine Maxim, Yan Mi, Ng Vivian, Rightmyer Adriana, Grigoriev Igor V., Baker Scott E., Turgeon B. Gillian
T-Toxin Virulence Genes: Unconnected Dots in a Sea of Repeats
mBio. 2023;: doi: 10.1128/mbio.00261-23

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.