Info • Cochliobolus heterostrophus C5
Please note that this organism is for archival use only. Please see the current Cochliobolus heterostrophus C5 v3.0 site for the latest data and information.

Status

v1.0 (December 2007): The Cochliobolus heterostrophus C5 genome sequence assembly v1.0 was built with Arachne assembler from whole genome shotgun and paired end sequencing reads. The nuclear genome sequence from this draft assembly was annotated using the JGI Genome Annotation Pipeline and custom analyses.

Summary statistics for the Cochliobolus heterostrophus C5 v1.0 release:

Nuclear Genome Assembly
v1.0
Nuclear genome size (Mbp)
 34.9
Sequencing read coverage depth
9.95x
Reported # of contigs
 400
# of nuclear scaffolds
89
# of nuclear scaffolds >2 Kbp
88
Nuclear scaffold N/L50
11/1.3 Mbp
Three largest Scaffolds (Mbp)
 2.7
2.3
1.7

 

Gene Models
v1.0
length (bp) of:
average
gene
1,837
transcript
1,639
exon
564
intron
105
description:

protein length (aa)
473
exons per gene
2.9
# of gene models
9,633

ESTs
Data set
# sequences total
# mapped to genome
# not mapped to genome
% mapped to genome
EST clusters

JGI_estClusters_454

JGI_estClusters_sanger

JGI_estClusters_sangerAnd454

101,641

9,111

88,751

99,850

9,025

86,948

1,791

86

1,803

98%

99%

98%
ESTs

JGI_goodEsts_454

JGI_goodEsts_sanger

280,981

28,747

278,250

28,598

2,731

149

99%

99%
Other
Cochliobolus_GenBank_CompleteCds

162
153
9
94%

Collaborators

Links

Funding

This work was performed under the auspices of the US Department of Energy's Office of Science, Biological and Environmental Research Program, and by the University of California, Lawrence Berkeley National Laboratory under contract No. DE-AC02-05CH11231, Lawrence Livermore National Laboratory under Contract No. DE-AC52-07NA27344, and Los Alamos National Laboratory under contract No. DE-AC02-06NA25396.