Info • Cochliobolus heterostrophus C5 v2.0
Please note that this organism is for archival use only. Please see the current Cochliobolus heterostrophus C5 v3.0 site for the latest data and information.


v2.0 (November 2011): This improved Cochliobolus heterostrophus C5 genome sequence assembly v2.0 was assembled using Phrap, from whole genome shotgun and paired end sequencing reads, and improved by manual finishing and fosmid clone sequencing. The nuclear genome sequence from this draft assembly was annotated using the JGI Genome Annotation Pipeline and custom analyses. Gene models and manual annotations from the v1.0 assembly were mapped forward to the v2.0 assembly using the fgenesh gene modeler and sequence similarity cutoffs.

Summary statistics for the Cochliobolus heterostrophus C5 v1.0 release are below.
Genome Assembly
Genome Assembly size (Mbp) 36.46
Sequencing read coverage depth Improved
# of contigs 88
# of scaffolds 68
# of scaffolds >= 2Kbp 68
Scaffold N50 7
Scaffold L50 (Mbp) 1.84
# of gaps 20
% of scaffold length in gaps 0.4%
Three largest Scaffolds (Mbp) 4.21, 3.37, 2.54

ESTs Data set # sequences total # mapped to genome % mapped to genome
EstClusters EstClusters 88751 72109 81.2%
Ests ESTs 309728 281924 91.0%
Other GenBank 162 100 61.7%

Gene Models FilteredModels4
length (bp) of: average median
gene 1580 1365
transcript 1423 1224
exon 535 320
intron 97 59
protein length (aa) 428 355
exons per gene 2.66 2
# of gene models 13336

Genome Reference(s)


The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.