Status
Version 1.0. (February 2012). This draft assembly of Cochliobolus lunatus was sequenced using Illumina technology and assembled using AllPathsLG (release version R40295).
Summary statistics for the Cochliobolus lunatus m118 v1.0
release are below.
| Genome Assembly | |
| Genome Assembly size (Mbp} | 31.17 |
| Sequencing read coverage depth | 129.5x |
| # of contigs | 240 |
| # of scaffolds | 171 |
| # of scaffolds >= 2Kbp | 117 |
| Scaffold N50 | 10 |
| Scaffold L50 (Mbp) | 1.53 |
| # of gaps | 69 |
| % of scaffold length in gaps | 0.2% |
| Three largest Scaffolds (Mbp) | 2.00, 1.93, 1.71 |
| ESTs | Data set | # sequences total | # mapped to genome | % mapped to genome |
| Ests | ESTs ** | 14947 | 12296 | 82.3% |
| Gene Models | FilteredModels1 | |
| length (bp) of: | average | median |
| gene | 1652 | 1391 |
| transcript | 1497 | 1260 |
| exon | 543 | 322 |
| intron | 90 | 59 |
| description: | ||
| protein length (aa) | 476 | 401 |
| exons per gene | 2.76 | 2 |
| # of gene models | 11004 |
Collaborators
- B. Gillian Turgeon, Cornell University
- Nada Krasevec, National Institute of Chemistry, Ljubljana, Slovenia
Links
- Portal for Cochliobolus heterostrophus C5 (version 2)
- Portal for Cochliobolus heterostrophus C4
- Portal for Cochliobolus sativus
Funding
The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.
