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Info • Cochliobolus lunatus m118 v2.0

Status

Version 2.0. (May 2012). This draft assembly of Cochliobolus lunatus was sequenced using Illumina technology and assembled using AllPathsLG (release version R40295). This second version is an improved annotation compared to version 1. The exact same assembly and ESTs were used as input.

Summary statistics for the Cochliobolus lunatus m118 v2.0 release are below.
Genome Assembly
Genome Assembly size (Mbp} 31.17
Sequencing read coverage depth 129.5x
# of contigs 240
# of scaffolds 171
# of scaffolds >= 2Kbp 117
Scaffold N50 10
Scaffold L50 (Mbp) 1.53
# of gaps 69
% of scaffold length in gaps 0.2%
Three largest Scaffolds (Mbp) 2.00, 1.93, 1.71


ESTs Data set # sequences total # mapped to genome % mapped to genome
Ests ESTs ** 14947 12296 82.3%
** These ESTs have been published previously: Berne et al (2008) Acta Chim. Slov (55): 93-100

Gene Models FilteredModels1
length (bp) of: average median
gene 1538 1294
transcript 1397 1167
exon 537 313
intron 90 59
description:
protein length (aa) 444 370
exons per gene 2.60 2
# of gene models 12131


Collaborators

Genome Reference(s)

Links

Funding

The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported by the Office of Science of the U.S. Department of Energy under Contract No. DE-AC02-05CH11231.